Usually that kind of swelling is related to the immune system overreacting(which you already know). I have had a few facial swellings among my dogs over the years. Often associated with a bug bite, or vaccines. I do agree that a bug bite would be very unusual in your part of the world, at this time of the year…and ten days does seem like a long time after a vaccine for a reaction. So, it is somewhat mysterious.
FTR, at this point, I always ask my vet to give a dose of benadryl before puppy vaccines, or I give some myself before we leave the house, to avoid hives or swelling.
I would keep an eye on it for sure. If it is a contact allergy, as you mentioned it will be really hard to isolate what is causing it.
If it is an immune system problem, there wouldn't necessarily be any signs in the lines of the puppy, as we don't even know if immune problems are inherited, but if they are you don't necessarily see problems in the relatives. There is no reason to be suspicious of your breeder or his dogs Hopefully it is just a puppy glitch, and will resolve itself as he matures.